Plot Method for mcml

Plots an MCML network. When cograph is available, delegates to cograph::plot_mcml() which renders a two-layer visualization (macro summary on top, within-cluster detail on bottom). Otherwise, converts to a netobject_group and plots each layer as a separate panel.

Usage

# S3 method for class 'mcml'
plot(x, ...)

Arguments

x

An mcml object.

...

Additional arguments passed to cograph::plot_mcml() (e.g., colors, edge_labels, mode).

Value

The input object, invisibly.

Examples

if (FALSE) { # \dontrun{
seqs <- data.frame(
  T1 = sample(LETTERS[1:6], 30, TRUE),
  T2 = sample(LETTERS[1:6], 30, TRUE),
  T3 = sample(LETTERS[1:6], 30, TRUE)
)
clusters <- list(G1 = c("A", "B", "C"), G2 = c("D", "E", "F"))
cs <- build_mcml(seqs, clusters)
plot(cs)
} # }