Plot Method for boot_glasso — plot.boot

Plots bootstrap results for GLASSO networks.

Usage

# S3 method for class 'boot_glasso'
plot(x, type = "edges", measure = NULL, ...)

Arguments

x: A boot_glasso object.
type: Character. Plot type: "edges" (default), "stability", "edge_diff", "centrality_diff", or "inclusion".
measure: Character. Centrality measure for type = "centrality_diff" (default: first available measure).
...: Additional arguments passed to plotting functions. For type = "edge_diff" and type = "centrality_diff", accepts order: "sample" (default, sorted by value) or "id" (alphabetical).

Value

A ggplot object, invisibly.

Examples

# \donttest{
set.seed(42)
mat <- matrix(rnorm(60), ncol = 4)
colnames(mat) <- LETTERS[1:4]
boot <- boot_glasso(as.data.frame(mat), iter = 20, cs_iter = 10,
  centrality = "strength", seed = 42)
plot(boot, type = "edges")

# }